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EMBOSS Web Interface
 

Showalign - Display a multiple sequence alignment [Manual]

Paste sequences file
 Option
  • Reference sequence(Number or Name)
  • Display reference sequence at bottom
  • What to show
  • Output order of the sequence
  • Similar case
  • Similarity scoring Matrix file Matrix File
  • Display consensus line at the bottom
  • Regions to put in uppercase
  • Display number
  • Display ruler
  • Width of sequence to display
  • Length of the left-hand margin for sequence names (Integer -1 or more)
  • Regions to colour (ex:1-50 green 125-165 red)
  • Set a cut-off for the % of positive scoring matches below which there is no consensus (0.000~100.000)
  • Sets the threshold for the scores (Any integer value)
  • Facility of setting the required number of identities at a position for it to give a consensus (0.000~100.000)
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2008-08-27 11:42

 

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2005-08-13 16:07

 

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