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ALIGNMENT GLOBAL |
Global sequence alignment
| Program name | Description |
|---|---|
| est2genome | Align EST and genomic DNA sequences |
| needle | Needleman-Wunsch global alignment |
| stretcher | Finds the best global alignment between two sequences |
| esim4 | Align an mRNA to a genomic DNA sequence |
| alignrunner | Align sequence pairs in a directory |
| comparator | Compare contact scores of two sequence alignments |
| contactalign | Damian Counsell's experimental 2.5-D alignment algorithm |
| nawalign | Damian Counsell's NW implementation |
| nawalignrunner | Nawalign all sequence pairs in a directory |
| needlerunner | Needle all sequence pairs in a directory |
| scorer | Score alignments using structural alignments |
| scorerrunner | SCORER for ordered pairs of substituted seqs |
| substitute | Substitute matches into a template |
| substituterunner | Run SUBSTITUTE on a directory of traces |