4.4. ORFinder

ORFinder´Â DNA ½ÃÄö½º¿¡¼­ Open Reading Frames(ORFs[1])À» ã½À´Ï´Ù.

ÀÔ·ÂµÈ ½ÃÄö½º ±æÀ̺¸´Ù ±æ°Ô Ç¥ÇöµÇ´Â ORFs´Â ãÁö ¾Ê½À´Ï´Ù.

"Select ORFs"¿É¼ÇÀº ã¾Æ³½ ORFs¸¦ ¼±ÅÃÇÏ´Â ¿É¼ÇÀÔ´Ï´Ù. "Longer than .." ¿É¼ÇÀ» ÀÌ¿ëÇϽøé amino acid sequence ±æÀÌ·Î ¼±ÅÃÇÏ½Ç ¼ö ÀÖÀ¸¸ç, "Longest" ¿É¼ÇÀº °¡Àå ±ä°ÍºÎÅÍ ¸î°³±îÁö¸¦ ¼±ÅÃÇÒ°ÍÀÎÁö ¼±ÅÃÇÏ´Â ¿É¼ÇÀÔ´Ï´Ù.

"Use Standard codon table" ¿É¼ÇÀº ORF¸¦ ãÀ»¶§ »ç¿ëµÇ´Â codonsÀ» ¼±ÅÃÇÏ´Â ¿É¼ÇÀÔ´Ï´Ù.

표 4-1. ORFinder

  between START and STOP between STOP
Linear Start Codon À§Ä¡°¡ ORFÀÇ ½ÃÀÛ, ½ÃÄö½ºÀÇ ³¡ ¶Ç´Â STOP CodonÀÇ À§Ä¡°¡ ORFÀÇ ³¡ ½ÃÄö½ºÀÇ ½ÃÀÛ ¶Ç´Â STOP Codon ¹Ù·Î µÚºÎÅÍ ORFÀÇ ½ÃÀÛ, STOP Codon ¶Ç´Â ½ÃÄö½ºÀÇ ¸¶Áö¸·ÀÌ ORFÀÇ ³¡
Circular ½ÃÄö½º´Â ÀÔ·ÂµÈ ±æÀÌÀÇ 3¹è·Î ÀνÄÇÑ´Ù. LinearÀ϶§¿Í µ¿ÀÏÇÏ°Ô Ã³¸®ÇÑ´Ù. ½ÃÄö½º´Â ÀÔ·ÂµÈ ±æÀÌÀÇ 3¹è·Î ÀνÄÇÑ´Ù. LinearÀ϶§¿Í µ¿ÀÏÇÏ°Ô Ã³¸®ÇÑ´Ù.

주석

[1]

ORFs´Â STOP codonsÀÇ »çÀÌÀÇ ¿µ¿ªÀ̰ųª START codons °ú STOP codons »çÀÌÀÇ ¿µ¿ªÀ¸·Î Á¤Àǵɼö ÀÖ½À´Ï´Ù.