EnCyclon Æ©Å丮¾ó

(ÁÖ)´º·ÎÁ¦³Ø½º Bioinformatics Team

2002³â 10¿ù 1ÀÏ

º» Æ©Å丮¾ó¿¡¼­´Â EnCyclonÀ» »ç¿ëÇÏ´Â ¹æ¹ýÀ» ½ÇÁ¦ ½ÇÇè½Ç¿¡¼­ »ç¿ëÇÏ´Â ¿¹¸¦ µé¾î »ç¿ëÇÏ´Â ¹æ¹ýÀ» ¼³¸íÇÕ´Ï´Ù.

EnCyclonÀ» ½ÃÀÛÇÏ·Á¸é ¿©±â¸¦ Ŭ¸¯ÇÏ¿© EnCyclon¿¡ Á¢¼ÓÇϽʽÿÀ.

EnCyclon® is Resgistered Trademark ¢â by Neurogenex Co., Ltd..


Â÷·Ê
½ÃÀÛÇϱâ Àü¿¡
1. CyCloner¸¦ ÀÌ¿ëÇÑ PCR
1.1. PCR ÇÁ¶óÀ̸Ӹ¦ ¸¸µì´Ï´Ù.
1.2. ¸¸µé¾îÁø ÇÁ¶óÀÌ¸Ó¿Í GFP cDNA¸¦ PCRÇÕ´Ï´Ù.
1.3. GFP cDNA¸¦ PCRÇÑ ½ÃÄö½º
2. CyCloner¸¦ ÀÌ¿ëÇÑ ¿£ÀÚÀÓ Å¬·Î´×
2.1. HindIII¿Í EcoRIÀ¸·Î Àμ­Æ® ½ÃÄö½º GFP¸¦ ÀÚ¸¨´Ï´Ù.
2.2. HindIII¿Í EcoRIÀ¸·Î º¤ÅÍ ½ÃÄö½º pUC19c¸¦ ÀÚ¸¨´Ï´Ù.
2.3. Á¦ÇÑÈ¿¼Ò·Î À߸° µÎ ½ÃÄö½º¸¦ ¶óÀ̰ÔÀ̼ÇÇÕ´Ï´Ù.
2.4. ¸¸µé¾îÁø pUC19_GFP ½ÃÄö½º

½ÃÀÛÇϱâ Àü¿¡

º» Æ©Å丮¾ó¿¡¼­´Â ½ÇÁ¦ ½ÇÇè½Ç¿¡¼­ »ç¿ëµÇ´Â À¯ÀüÀÚ ½ÃÄö½º¸¦ EnCyclonÀ» ÀÌ¿ëÇØ¼­ Ŭ·Î´×À» ½Ã¹Ä·¹À̼ÇÇÏ´Â ¹æ¹ýÀ» ¼³¸íÇÕ´Ï´Ù.

EnCyclonÀÌ Áö¿øÇϴ Ŭ·Î´× ¹æ¹ýÀº PCR, ¿£ÀÚÀÓ Å¬·Î´×(Enzyme Cloning)ÀÌ ÀÖ½À´Ï´Ù.

º» Æ©Å丮¾ó ¾È¿¡¼­ ¿À·ù¸¦ ¹ß°ßÇÏ½Ã¸é ¹®¼­´ã´çÀÚ ¿¡°Ô ¿¬¶ô ÁֽʽÿÀ


1Àå. CyCloner¸¦ ÀÌ¿ëÇÑ PCR

ÀÌ Àå¿¡¼­´Â EnCyclonÀ» ÀÌ¿ëÇØ¼­ PCRÇÏ´Â ¹æ¹ýÀ» ¼³¸íÇϰڽÀ´Ï´Ù.

GFP ½ÃÄö½º Plasmid Map



º» Æ©Å丮¾ó¿¡¼­´Â GFP(Green Fluorescent Protein) cDNA ½ÃÄö½ºÀÇ GFP CDS¿µ¿ª(27~742)À» PCRÇÏ´Â ÇÁ¶óÀ̸Ӹ¦ ¸¸µé°Ú½À´Ï´Ù.

Æ©Å丮¾ó¿¡ »ç¿ëµÇ´Â ½ÃÄö½º´Â ´ÙÀ½°ú °°½À´Ï´Ù.




1.1. PCR ÇÁ¶óÀ̸Ӹ¦ ¸¸µì´Ï´Ù.

GFP cDNA ½ÃÄö½ºÀÇ GFP CDS¿µ¿ªÀ» PCRÇÏ´Â ÇÁ¶óÀ̸Ӹ¦ Á¦ÇÑÈ¿¼Ò HindIII, EcoRIÀÇ ÀνĽÃÄö½º¸¦ Æ÷ÇÔÇÏ´Â ¸µÄ¿¸¦ Ãß°¡ÇÏ¿© ¸¸µé°Ú½À´Ï´Ù.

HindIII, EcoRI Á¦ÇÑÈ¿¼Ò ¸µÄ¿¸¦ »ç¿ëÇÏ´Â ÀÌÀ¯´Â ÇÁ¶óÀ̸Ӹ¦ ¸¸µé¾î ±× ÇÁ¶óÀ̸ӷΠPCR ÇÑ °á°ú ½ÃÄö½º¿Í ´Ù¸¥ º¤ÅÍ ½ÃÄö½º¿Í Ŭ·Î´×À» Çϱâ À§ÇØ Àû´çÇÑ Cohesive Ends¸¦ ¸¸µé±â À§ÇÔÀÔ´Ï´Ù. ¾î¶² ¸µÄ¿¸¦ ¼±ÅÃÇÏ´À³Ä ÇÏ´Â ¹®Á¦´Â ÀÌ CDS¸¦ ³ÖÀ» º¤ÅͰ¡ °¡Áö°í ÀÖ´Â Á¦ÇÑÈ¿¼Ò »çÀÌÆ®¿¡ ÀÇÇØ °áÁ¤µË´Ï´Ù.

¸¸ÀÏ ½ÃÄö½º¿¡¼­ Àû´çÇÑ CDS ¿µ¿ª ¶Ç´Â ÀÏÁ¤ ¿µ¿ª¸¸ PCR ÇÒ °æ¿ì¿¡´Â ÀÌ ¸µÄ¿¸¦ ¹«½ÃÇϽʽÿÀ.

ÁغñÇÒ Àç·á

  • GFP cDNA ½ÃÄö½º

  • 5' Forward ÇÁ¶óÀÌ¸Ó ¸µÄ¿: GGG AAG CTT(HindIII Á¦ÇÑÈ¿¼Ò ÀÎ½Ä ½ÃÄö½º)(¼±ÅûçÇ×)

  • 3' Reverse ÇÁ¶óÀÌ¸Ó ¸µÄ¿: GGG AAG CTT(EcoRI Á¦ÇÑÈ¿¼Ò ÀÎ½Ä ½ÃÄö½º)(¼±ÅûçÇ×)



ÇÁ¶óÀÌ¸Ó ¸¸µå´Â ¼ø¼­

  1. ¿©±â ¸¦ Ŭ¸¯ÇÏ¿© PrimerDesigner ÆäÀÌÁö¸¦ ¿©½Ê½Ã¿À.

  2. GFP cDNA ½ÃÄö½º¸¦ ½ÃÄö½º ÀÔ·Ââ¿¡ ÀÔ·ÂÇÕ´Ï´Ù.

    ½ÃÄö½º¸¦ ÀÔ·ÂÇÏ´Â ¹æ¹ýÀº ¿©·¯ °¡Áö°¡ ÀÖ½À´Ï´Ù. ¿©±â¿¡¼­´Â Sequence Loader¸¦ ÀÌ¿ëÇÏ¿© GENBANK¿¡¼­ ÀÎÅͳÝÀ» ÅëÇØ¼­ ÀÔ·ÂÇϰڽÀ´Ï´Ù.

    1. Load Sequence ¹öưÀ» Ŭ¸¯ÇÏ¿© Sequence Loader¸¦ È£ÃâÇÕ´Ï´Ù.

    2. GFP cDNAÀÇ GENBANK AccessionÀ» ¾Ë°í ÀÖÀ¸¹Ç·Î, GENBANK AccessionÀ¸·Î ½ÃÄö½º¸¦ ·ÎµåÇϱâ À§ÇÏ¿© ÄÞº¸¹Ú½º¿¡¼­ GENBANK AccessionÀ» ¼±ÅÃÇϽʽÿÀ.

    3. ¿·ÀÇ ÅØ½ºÆ® ¹Ú½º¿¡ GFP cDNAÀÇ GENBANK Accession "M62653"À» ÀÔ·ÂÇϽʽÿÀ.

    4. ¹Ù·Î ¿·ÀÇ "Load" ¹öưÀ» Ŭ¸¯ÇϽʽÿÀ.

    5. ½ÃÄö½º°¡ ½ÃÄö½º ÀԷ¹ڽº¿¡ µé¾î°¬À» °ÍÀÔ´Ï´Ù.

    ½ÃÄö½º¸¦ ÀÔ·ÂÇÏ´Â ´Ù¸¥ ¹æ¹ýÀº EnCyclon »ç¿ëÀÚ ¾È³»¼­ÀÇ "½ÃÄö½º ÀÔ·ÂÇÏ´Â ¹æ¹ý"À» ÂüÁ¶ÇϽʽÿÀ.

  3. ¸µÄ¿¸¦ ÀÔ·ÂÇÕ´Ï´Ù.(¼±ÅûçÇ×)

    ¸¸µé¾îÁø ÇÁ¶óÀÌ¸Ó¿Í ÀÔ·ÂÇÑ ½ÃÄö½º°¡ PCR ¹ÝÀÀÀ» ½ÃÄ×À» ¶§ ¸¸µé¾îÁö´Â ½ÃÄö½º°¡ HindIII, EcoRI Á¦ÇÑÈ¿¼Ò »çÀÌÆ®¸¦ °¡Áöµµ·Ï Çϱâ À§ÇÏ¿© HindIII, EcoRIÀÇ ÀÎ½Ä ½ÃÄö½º¸¦ ÀÔ·ÂÇÕ´Ï´Ù.

    • 5' Forward ÇÁ¶óÀÌ¸Ó ¸µÄ¿: GGG AAG CTT(HindIII Á¦ÇÑÈ¿¼Ò »çÀÌÆ®)

    • 3' Reverse ÇÁ¶óÀÌ¸Ó ¸µÄ¿: GGG AAG CTT(EcoRI Á¦ÇÑÈ¿¼Ò »çÀÌÆ®)



  4. ºÐ¼® ¿É¼ÇÀ» ¼±ÅÃÇÕ´Ï´Ù.

    "Design Option"¿¡ ±âº»°ªÀ¸·Î "Full Length"°¡ ¼±ÅõǾîÀÖÀ» °ÍÀÔ´Ï´Ù. ±×·¯³ª ¿©±â¿¡¼­´Â Á¤È®ÇÏ°Ô GFP CDS ¿µ¿ª¸¸À» PCRÇÏ´Â ÇÁ¶óÀ̸Ӹ¦ µðÀÚÀÎÇϱ⠿øÇϱ⠶§¹®¿¡ Longest ORF¸¦ ¼±ÅÃÇÕ´Ï´Ù. ÀÌ ¿É¼ÇÀº ½ÃÄö½º¿¡¼­ ORF ¿µ¿ªÀ» ã¾Æ ±× Áß °¡Àå ±ä ¿µ¿ªÀ» PCRÇÕ´Ï´Ù.

    ´Ù¸¥ ¿É¼ÇÀº ±âº»°ªÀ¸·Î µÎ½Ê½Ã¿À.

  5. " O K " ¹öưÀ» Ŭ¸¯ÇÏ¿© ÇÁ·Î±×·¥À» ¼öÇà½ÃŰ½Ê½Ã¿À.

  6. ÇÁ·Î±×·¥ ¼öÇà °á°ú

    Warning:Your sequence is SINGLE stranded, restriction enzyme can analyze only DOUBLE strand. Set seqeunce to DOUBLE strand  (1)
                
    
    M62653   966 base pair, Enzymes checked: ApaI, BamHI, BglII, ClaI, EcoRI, HindIII, HpaI, KpnI, MluI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SpeI, XbaI, XhoI (2)
    
    Primer Table                                                         (3)
    Forward Primer
    HindIII/M62653-F
    HindIII, M62653, 24 bp annealing with Tm=56, Forward primer, 33 mer
    GGG AAG CTT ATG AGT AAA GGA GAA GAA CTT TTC
    
    Reverse Primer                                                       (4)
    HindIII/M62653-R
    HindIII, M62653, 24 bp annealing with Tm=56, Reverse primer, 33 mer
    GGG AAG CTT TTA TTT GTA TAG TTC ATC CAT GCC
    
    Enzyme Site Check Table                                              (5)
    Enzyme       #  Sequence         Positions
    HpaI         1  GTT/AAC          490
    NcoI         1  C/CATGG          167
    NdeI         1  CA/TATG          231
    PvuII        1  CAG/CTG          677
    
    PCR Analysis Map with Tm value 24
                    GGGAAGCTTATGAGTAAAGGAGAAGAACTTTTC (A)       
                             ||||||||||||||||||||||||           
    tacacacgaataaaagataacaaagatgagtaaaggagaagaacttttcactggagttgt  60
    
    
    cccaattcttgttgaattagatggtgatgttaatgggcacaaattttctgtcagtggaga  120
    
    
    gggtgaaggtgatgcaacatacggaaaacttacccttaaatttatttgcactactggaaa  180
    
    
    actacctgttccatggccaacacttgtcactactttctcttatggtgttcaatgcttttc  240
    
    
                      GGGAAGCTTTTATTTGTATAGTTCATCCATGCC (B)  
                                                |||||||
    aagatacccagatcatatgaaacagcatgactttttcaagagtgccatgcccgaaggtta  300
    
    
    tgtacaggaaagaactatatttttcaaagatgacgggaactacaagacacgtgctgaagt  360
    
    
    caagtttgaaggtgatacccttgttaatagaatcgagttaaaaggtattgattttaaaga  420
    
    
    agatggaaacattcttggacacaaattggaatacaactataactcacacaatgtatacat  480
    
    
    catggcagacaaacaaaagaatggaatcaaagttaacttcaaaattagacacaacattga  540
    
    
    agatggaagcgttcaactagcagaccattatcaacaaaatactccaattggcgatggccc  600
    
    
    tgtccttttaccagacaaccattacctgtccacacaatctgccctttcgaaagatcccaa  660
    
    
    cgaaaagagagaccacatggtccttcttgagtttgtaacagctgctgggattacacatgg  720
                                                              ||
                                                              CC
    
    
    catggatgaactatacaaataaatgtccagacttccaattgacactaaagtgtccgaaca  780
    |||||||||||||||||||||||  
    GTACCTACTTGATATGTTTATTTTCGAAGGG (B)  
    
    
    attactaaaatctcagggttcctggttaaattcaggctgagatattatttatatatttat  840
    
    
    agattcattaaaattgtatgaataatttattgatgttattgatagaggttattttcttat  900
    
    
    taaacaggctacttggagtgtattcttaattctatattaattacaatttgatttgacttg  960
    
    
    ctcaaa  966
    
    PCR Product with Tm value 54                                         (6)
    
    NG1.0       NoID     linear    dsDNA  735 bp
    DESCRIPTION 735 bp, PCR Product of M62653
                Aequorea victoria green-fluorescent protein mRNA, complete cds.
    FEATURE
       Source   10..727        F   Genbank:M62653   
       Source   1..33          F   NoID   
       Source   703..735       R   NoID   
       CDS      10..726        F   GFP           
    ENDS        0..0
    SEQUENCE
              1 GGGAAGCTTA TGAGTAAAGG AGAAGAACTT TTCactggag ttgtcccaat tcttgttgaa 
             61 ttagatggtg atgttaatgg gcacaaattt tctgtcagtg gagagggtga aggtgatgca 
            121 acatacggaa aacttaccct taaatttatt tgcactactg gaaaactacc tgttccatgg 
            181 ccaacacttg tcactacttt ctcttatggt gttcaatgct tttcaagata cccagatcat 
            241 atgaaacagc atgacttttt caagagtgcc atgcccgaag gttatgtaca ggaaagaact 
            301 atatttttca aagatgacgg gaactacaag acacgtgctg aagtcaagtt tgaaggtgat 
            361 acccttgtta atagaatcga gttaaaaggt attgatttta aagaagatgg aaacattctt 
            421 ggacacaaat tggaatacaa ctataactca cacaatgtat acatcatggc agacaaacaa 
            481 aagaatggaa tcaaagttaa cttcaaaatt agacacaaca ttgaagatgg aagcgttcaa 
            541 ctagcagacc attatcaaca aaatactcca attggcgatg gccctgtcct tttaccagac 
            601 aaccattacc tgtccacaca atctgccctt tcgaaagatc ccaacgaaaa gagagaccac 
            661 atggtccttc ttgagtttgt aacagctgct gggattacac atGGCATGGA TGAACTATAC 
            721 AAATAAAAGC TTCCC     
    //
    
    (1)
    PrimerDesigner´Â Double Strand ½ÃÄö½º¸¦ ´ë»óÀ¸·Î ÇÏ´Â ÇÁ·Î±×·¥ÀÔ´Ï´Ù. ÀÔ·Â ½ÃÄö½º°¡ single strand¸é double strand·Î º¯È¯ÇÏ¿© ÀÛ¾÷ÇÕ´Ï´Ù.
    (2)
    ÀÔ·ÂÇÑ ½ÃÄö½ºÀÇ ID¿Í ¸¸µé¾îÁø ½ÃÄö½º¸¦ °Ë»çÇÑ Á¦ÇÑÈ¿¼Ò ¸®½ºÆ®
    (3)
    ¸¸µé¾îÁø Forward Primer
    (4)
    ¸¸µé¾îÁø Reverse Primer
    (6)
    ¸¸µé¾îÁø ÇÁ¶óÀÌ¸Ó¿Í ÀÔ·Â ½ÃÄö½ºÀÇ PCR °á°ú(PCRCyclerÀÇ ±âº»¿É¼ÇÀ¸·Î ¼öÇàµÊ)

1.2. ¸¸µé¾îÁø ÇÁ¶óÀÌ¸Ó¿Í GFP cDNA¸¦ PCRÇÕ´Ï´Ù.

PrimerDesigner¿¡¼­ ¸¸µç ÇÁ¶óÀÌ¸Ó¿Í ½ÃÄö½º¸¦ PCR ¹ÝÀÀ ½Ãŵ´Ï´Ù.

Áß¿ä: PrimerDesignerÀÇ Ãâ·ÂµÈ °á°ú¸¦ ÀÚ¼¼È÷ »ìÆìº¸¸é ¸¶Áö¸· ºÎºÐ¿¡ ¸¸µé¾îÁø ÇÁ¶óÀÌ¸Ó¿Í ÀÔ·ÂÇÑ ½ÃÄö½º¸¦ PCRÇÑ °á°ú ½ÃÄö½º¸¦ Ãâ·ÂÇÏ¿´À» °ÍÀÔ´Ï´Ù. Ưº°ÇÑ °æ¿ì(A-AdditionÀÌ ÇÊ¿äÇÑ °æ¿ì)°¡ ¾Æ´Ï¶ó¸é PrimerDesigner¿¡¼­ Ãâ·ÂÇÑ °á°ú¸¦ »ç¿ëÇÏ¿©µµ µË´Ï´Ù.

PCR ¼ø¼­

  1. ¿©±â ¸¦ Ŭ¸¯ÇÏ¿© PCRCycler ÆäÀÌÁö¸¦ ¿©½Ê½Ã¿À.

  2. GFP cDNA ½ÃÄö½º¸¦ ½ÃÄö½º ÀÔ·Ââ¿¡ ÀÔ·ÂÇÕ´Ï´Ù. GFP cDNA´Â PrimerDesigner¿¡¼­ ÀÌ¹Ì ÀÔ·ÂÇÏ¿© ÇÁ·Î±×·¥À» ¼öÇàÇÏ¿´±â ¶§¹®¿¡ WorkBench¿¡ ½ÃÄö½º°¡ ÀúÀåµÇ¾î ÀÖ½À´Ï´Ù. ¿©±â¿¡ ÀúÀåµÈ ½ÃÄö½º¸¦ È£ÃâÇϰڽÀ´Ï´Ù.

    Tip: EnCyclonÀº ÇÑ ¹ø ÀÔ·ÂÇÑ ½ÃÄö½º´Â ´ÙÀ½¿¡ »ç¿ëÀÌ °¡´ÉÇϵµ·Ï ºÐ¼® °á°ú¿Í ÇÔ²² ½ÃÄö½ºµµ °°ÀÌ WorkBench¿¡ ÀúÀåÇÕ´Ï´Ù. ÀúÀåµÈ ½ÃÄö½º´Â Sequence Loader¸¦ ÀÌ¿ëÇØ ´Ù½Ã ºÒ·¯¿Ã ¼ö ÀÖÀ¸¸ç, WorkBench¸¦ ÀÌ¿ëÇÏ¿© ½ÃÄö½º¸¦ ÆíÁý, ÇÁ·Î±×·¥ ¼öÇà°á°ú º¸±â, Plasmid Map º¸±â°¡ °¡´ÉÇÕ´Ï´Ù. ÀÚ¼¼ÇÑ ³»¿ëÀº EnCyclon »ç¿ëÀÚ ¾È³»¼­ÀÇ "WorkBench »ç¿ëÇϱâ"¸¦ Âü°íÇϽʽÿÀ.

    1. Load Sequence¸¦ Ŭ¸¯ÇÏ¿© Sequence Loader¸¦ È£ÃâÇÕ´Ï´Ù.

    2. WorkBenck ÄÞº¸¹Ú½º¸¦ ¼±ÅÃÇϸé GFP cDNAÀÇ ½ÃÄö½º ID¿Í ±æÀ̸¦ Ç¥½ÃÇÑ Ç׸ñÀÌ ÀÖ½À´Ï´Ù. ¼±ÅÃÇϽʽÿÀ. ±×¸®°í ¿·¿¡ Load ¹öưÀ» Ŭ¸¯ÇϽʽÿÀ.

    3. ½ÃÄö½º°¡ ½ÃÄö½º ÀԷ¹ڽº¿¡ µé¾î°¬À» °ÍÀÔ´Ï´Ù.

  3. ÇÁ¶óÀ̸Ӹ¦ ÀÔ·ÂÇÕ´Ï´Ù.

    ÀÌÀü °úÁ¤¿¡¼­ PrimerDesigner°¡ ¸¸µé¾î³½ ÇÁ¶óÀ̸Ӹ¦ ÀÔ·ÂÇϽʽÿÀ. Forward Primer¸¦ Primer A¿¡ Reverse Primer¸¦ Primer BÀÔ·ÂÇϽʽÿÀ.

    Tip: PrimerDesigner°¡ ¸¸µé¾î³½ ÇÁ¶óÀ̸Ӹ¦ ±â·ÏÇØ ³õÁö ¾ÊÀ¸¼Ì´Ù¸é, ´Ù½Ã PrimerDesigner¸¦ ´Ù½Ã ¼öÇàÇÏÁö ¾Ê°í ÇÁ¶óÀ̸Ӹ¦ °Ë»öÇÏ´Â ¹æ¹ýÀÌ ÀÖ½À´Ï´Ù. WorkBench¿¡´Â ÀÌÀü¿¡ ¼öÇàÇÑ ½ÃÄö½º ¹× °á°ú°¡ ÀúÀåµË´Ï´Ù. WorkBench¸¦ ¿­¾î ½ÃÄö½º¸¦ ¼±ÅÃÇÑ ÈÄ ÀÌÀü¿¡ ¼öÇàÇÑ °á°ú¸¦ ¼±ÅÃÇÏ¿© PrimerDesigner ¸¸µé¾î³½ ÇÁ¶óÀ̸Ӹ¦ ãÀ» ÀÖ½À´Ï´Ù.

  4. ¿É¼ÇÀ» ¼±ÅÃÇÕ´Ï´Ù.

  5. " O K " ¹öưÀ» Ŭ¸¯ÇÏ¿© ÇÁ·Î±×·¥À» ¼öÇà½ÃŰ½Ê½Ã¿À.


1.3. GFP cDNA¸¦ PCRÇÑ ½ÃÄö½º

´ÙÀ½°ú °°ÀÌ PCR Product°¡ ¸¸µé¾îÁ³½À´Ï´Ù. ¿øÇÏ´Â ½ÃÄö½º°¡ ¸¸µé¾î Á³´Ù¸é ½ÃÄö½º ¾ÕÀÇ Ã¼Å©¹Ú½º¸¦ ¼±ÅÃÇϽðí "Add selected sequence to WorkBench"¸¦ Ŭ¸¯ÇϽʽÿÀ.

M62653   Linear DNA, 966 base pair
36 Annealing Tm value 

PCR Product

NG1.0       NoID     linear    dsDNA  735 bp
DESCRIPTION 735 bp, PCR Product of M62653
            Aequorea victoria green-fluorescent protein mRNA, complete cds.
FEATURE
   Source   10..727        F   Genbank:M62653   
   Source   1..33          F   PrimerA   
   Source   703..735       R   PrimerB   
   CDS      10..726        F   GFP           
ENDS        0..0
SEQUENCE
          1 GGGAAGCTTA TGAGTAAAGG AGAAGAACTT TTCactggag ttgtcccaat tcttgttgaa 
         61 ttagatggtg atgttaatgg gcacaaattt tctgtcagtg gagagggtga aggtgatgca 
        121 acatacggaa aacttaccct taaatttatt tgcactactg gaaaactacc tgttccatgg 
        181 ccaacacttg tcactacttt ctcttatggt gttcaatgct tttcaagata cccagatcat 
        241 atgaaacagc atgacttttt caagagtgcc atgcccgaag gttatgtaca ggaaagaact 
        301 atatttttca aagatgacgg gaactacaag acacgtgctg aagtcaagtt tgaaggtgat 
        361 acccttgtta atagaatcga gttaaaaggt attgatttta aagaagatgg aaacattctt 
        421 ggacacaaat tggaatacaa ctataactca cacaatgtat acatcatggc agacaaacaa 
        481 aagaatggaa tcaaagttaa cttcaaaatt agacacaaca ttgaagatgg aagcgttcaa 
        541 ctagcagacc attatcaaca aaatactcca attggcgatg gccctgtcct tttaccagac 
        601 aaccattacc tgtccacaca atctgccctt tcgaaagatc ccaacgaaaa gagagaccac 
        661 atggtccttc ttgagtttgt aacagctgct gggattacac atGGCATGGA TGAACTATAC 
        721 AAATAAAAGC TTCCC     
// 
¸¸µé¾îÁø Forward Primer, Reverse Primer, °è»êµÇ¾îÁø PCR Product¸¦ È®ÀÎÇϽñ⠹ٶø´Ï´Ù.


2Àå. CyCloner¸¦ ÀÌ¿ëÇÑ ¿£ÀÚÀÓ Å¬·Î´×

º» Æ©Å丮¾ó¿¡¼­´Â pUC19c º¤ÅÍÀÇ HindIII, EcoRi Á¦ÇÑÈ¿¼Ò »çÀÌÆ® »çÀÌ¿¡ GFP(Green Fluorescence Protein)¸¦ Ŭ·Î´×ÇϰڽÀ´Ï´Ù.

Æ©Å丮¾ó¿¡ »ç¿ëµÇ´Â ½ÃÄö½º´Â ´ÙÀ½°ú °°½À´Ï´Ù.

¹°·Ð ¹Ì¸® ÆÄÀÏ·Î ÀúÀåÇϼŵµ »ó°ü¾øÁö¸¸, º» Æ©Å丮¾ó¿¡¼­´Â ÇÊ¿äÇÒ ¶§¸¶´Ù ½ÃÄö½º ·Î´õ¸¦ ÀÌ¿ëÇÏ¿© ½ÃÄö½º¸¦ ÀÎÅͳݿ¡¼­ ¹Ù·Î ºÒ·¯¿À°Ú½À´Ï´Ù.

CyCloner¸¦ ÀÌ¿ëÇÑ Àüü Ŭ·Î´× °úÁ¤Àº ´ÙÀ½°ú °°½À´Ï´Ù.



Áß¿ä: Cyclon¿¡¼­´Â NGSF(Neurogenex Sequence Format)Çü½ÄÀÇ ½ÃÄö½º¸¦ »ç¿ëÇÏ±æ ±ÇÀåÇÕ´Ï´Ù. GENBANK, EMBL, FASTA°ú °°Àº ½ÃÄö½º´Â Á¤È®ÇÏ°Ô µ¿ÀÛÇÏÁö ¾ÊÀ» ¼ö ÀÖ½À´Ï´Ù. SeqEditorÀ» ÀÌ¿ëÇÏ¸é ´Ù¸¥ Çü½ÄÀÇ ½ÃÄö½º¸¦ NGSFÇü½ÄÀÇ ½ÃÄö½º·Î º¯È¯ÇÏ½Ç ¼ö ÀÖ½À´Ï´Ù.




2.1. HindIII¿Í EcoRIÀ¸·Î Àμ­Æ® ½ÃÄö½º GFP¸¦ ÀÚ¸¨´Ï´Ù.

Ŭ·Î´×¿¡ »ç¿ëµÉ Àμ­Æ® ½ÃÄö½º¸¦ DNACutter·Î ÀÚ¸¨´Ï´Ù.

Àμ­Æ® ½ÃÄö½º DNA Cut ¼ø¼­

  1. ¿©±â¸¦ Ŭ¸¯ÇÏ¿© DNACutter ÆäÀÌÁö¸¦ ¿©½Ê½Ã¿À.

  2. "Enzymes" ÀÔ·Â ÅØ½ºÆ® ¹Ú½º¿¡ Á¦ÇÑÈ¿¼Ò À̸§ HindIII, EcoRI¸¦ ÀÔ·ÂÇÕ´Ï´Ù.

  3. GFP cDNA¿¡ HindIII, EcoRIÀÇ Á¦ÇÑÈ¿¼Ò ÀÎ½Ä ½ÃÄö½º¸¦ ¸µÄ¿·Î Ãß°¡ÇÑ Àμ­Æ® ½ÃÄö½º¸¦ ÀÔ·ÂÇÕ´Ï´Ù.

    ÀÌÀü ÀåÀÇ Æ©Å丮¾ó¿¡¼­ºÎÅÍ °è¼Ó µû¶óÇϼ̴ٸé WorkBench¿¡ ÀÌÀü Àå¿¡¼­ ¸¸µç ½ÃÄö½º°¡ ÀÖÀ» °ÍÀÔ´Ï´Ù. ¿©±â¼­´Â WorkBench¿¡¼­ ÀúÀåµÈ ½ÃÄö½º¸¦ ºÒ·¯µéÀ̰ڽÀ´Ï´Ù. ¸¸ÀÏ ±×·¸Áö ¾Ê´Ù¸é ¿©±â¸¦ Ŭ¸¯ÇÏ¿© ½ÃÄö½º¸¦ º¹»çÇÏ¿© ½ÃÄö½º ÀԷ¹ڽº¿¡ ºÙÀ̽ʽÿÀ.

    1. "Load Sequence"¹öưÀ» Ŭ¸¯ÇÏ¿© Sequence Loader¸¦ ¿±´Ï´Ù.

    2. ÀÌÀü¿¡ ÀÔ·ÂÇß´ø ½ÃÄö½º¸¦ ºÒ·¯µéÀ̱â À§Çؼ­ WorkBench ÄÞº¸¹Ú½º¿¡¼­ ½ÃÄö½º¸¦ ¼±ÅÃÇÕ´Ï´Ù.

    3. ÄÞº¸¹Ú½º ¿·¿¡ ÀÖ´Â "Load" ¹öưÀ» Ŭ¸¯ÇϽʽÿÀ.

  4. " O K " ¹öưÀ» Ŭ¸¯ÇÏ¿© ÇÁ·Î±×·¥À» ¼öÇà½ÃŰ½Ê½Ã¿À

    ÇÁ·Î±×·¥À» ½ÇÇà½ÃŰ¸é ´ÙÀ½°ú °°Àº °á°ú°¡ ³ª¿É´Ï´Ù.

    NoID  Linear DNA, 735 base pair
    2 restriction enzymes selected, Max Cut=Unlimited
    
    Fragment
    
     #  Length
     1     727  HindIII..HindIII (5..728)
     2       8     //..HindIII   (1..5)
     3       8  HindIII..//      (728..736)
    
    NG1.0       NoID             linear    dsDNA  727 bp
    DESCRIPTION 735 bp, PCR Product of M62653
                Aequorea victoria green-fluorescent protein mRNA, complete cds.
                727bp, (HindIII, HindIII) Restriction fragments of NoID
    FEATURE
       Source   6..723         F   Genbank:M62653   
       Source   1..29          F   PrimerA   
       Source   699..727       R   PrimerB   
       Source   1..727         F   NoID   
       CDS      6..722         F   GFP         
    ENDS        +4..+4
    SEQUENCE
              1 AGCTTATGAG TAAAGGAGAA GAACTTTTCa ctggagttgt cccaattctt gttgaattag 
             61 atggtgatgt taatgggcac aaattttctg tcagtggaga gggtgaaggt gatgcaacat 
            121 acggaaaact tacccttaaa tttatttgca ctactggaaa actacctgtt ccatggccaa 
            181 cacttgtcac tactttctct tatggtgttc aatgcttttc aagataccca gatcatatga 
            241 aacagcatga ctttttcaag agtgccatgc ccgaaggtta tgtacaggaa agaactatat 
            301 ttttcaaaga tgacgggaac tacaagacac gtgctgaagt caagtttgaa ggtgataccc 
            361 ttgttaatag aatcgagtta aaaggtattg attttaaaga agatggaaac attcttggac 
            421 acaaattgga atacaactat aactcacaca atgtatacat catggcagac aaacaaaaga 
            481 atggaatcaa agttaacttc aaaattagac acaacattga agatggaagc gttcaactag 
            541 cagaccatta tcaacaaaat actccaattg gcgatggccc tgtcctttta ccagacaacc 
            601 attacctgtc cacacaatct gccctttcga aagatcccaa cgaaaagaga gaccacatgg 
            661 tccttcttga gtttgtaaca gctgctggga ttacacatGG CATGGATGAA CTATACAAAT 
            721 AAAAGCT      
    //
    
    NG1.0       NoID             linear    dsDNA  8 bp
    DESCRIPTION 735 bp, PCR Product of M62653
                Aequorea victoria green-fluorescent protein mRNA, complete cds.
                8bp, (HindIII) Restriction fragments of NoID
    FEATURE
       Source   1..8           F   PrimerA   
       Source   1..8           F   NoID   
    ENDS        0..+4
    SEQUENCE
              1 GGGAAGCT      
    //
    
    NG1.0       NoID             linear    dsDNA  8 bp
    DESCRIPTION 735 bp, PCR Product of M62653
                Aequorea victoria green-fluorescent protein mRNA, complete cds.
                8bp, (HindIII) Restriction fragments of NoID
    FEATURE
       Source   1..8           R   PrimerB   
       Source   1..8           F   NoID   
    ENDS        +4..0
    SEQUENCE
              1 AGCTTCCC      
    //
    

    Ãâ·ÂµÇ´Â ½ÃÄö½º´Â ½ÃÄö½ºÀÇ ±æÀÌ ¼øÀ¸·Î Ãâ·ÂµË´Ï´Ù.

  5. °¡Àå óÀ½ ³ª¿À´Â ½ÃÄö½º¿¡ ¿ì¸®°¡ ¿øÇÏ´Â GFP CDS°¡ ÀÖÀ» °ÍÀ» È®ÀÎÇÒ ¼ö ÀÖ½À´Ï´Ù. ÀÌ ½ÃÄö½º ¾Õ¿¡ Àִ üũ¹Ú½º¸¦ üũÇϰí "Add selected sequence to WorkBench"¸¦ Ŭ¸¯ÇÏ¿© WorkBench¿¡ ³Ö½À´Ï´Ù.

    Tip: DNACutterÀÇ °á°úÀÇ Fragment List¿Í ÀÌÈÄ¿¡ Ãâ·ÂµÇ´Â ½ÃÄö½º´Â ¸µÅ©·Î ¿¬°áµÇ¾î ÀÖ½À´Ï´Ù. Fragment List¿¡¼­ ½ÃÄö½º¸¦ Ŭ¸¯ÇÏ½Ã¸é ½ÃÄö½º ³»¿ëÀ¸·Î ¹Ù·Î À̵¿ÇÕ´Ï´Ù.



ÇÁ·Î±×·¥À» ¼öÇàÇÏ¿© WorkBench¿¡ ³ÖÀº ½ÃÄö½º´Â ´ÙÀ½°ú °°½À´Ï´Ù.

NG1.0       NoID             linear    dsDNA  727 bp
DESCRIPTION 735 bp, PCR Product of M62653
            Aequorea victoria green-fluorescent protein mRNA, complete cds.
            727bp, (HindIII, HindIII) Restriction fragments of NoID
FEATURE
   Source   6..723         F   Genbank:M62653   
   Source   1..29          F   PrimerA   
   Source   699..727       R   PrimerB   
   Source   1..727         F   NoID   
   CDS      6..722         F   GFP         
ENDS        +4..+4
SEQUENCE
          1 AGCTTATGAG TAAAGGAGAA GAACTTTTCa ctggagttgt cccaattctt gttgaattag 
         61 atggtgatgt taatgggcac aaattttctg tcagtggaga gggtgaaggt gatgcaacat 
        121 acggaaaact tacccttaaa tttatttgca ctactggaaa actacctgtt ccatggccaa 
        181 cacttgtcac tactttctct tatggtgttc aatgcttttc aagataccca gatcatatga 
        241 aacagcatga ctttttcaag agtgccatgc ccgaaggtta tgtacaggaa agaactatat 
        301 ttttcaaaga tgacgggaac tacaagacac gtgctgaagt caagtttgaa ggtgataccc 
        361 ttgttaatag aatcgagtta aaaggtattg attttaaaga agatggaaac attcttggac 
        421 acaaattgga atacaactat aactcacaca atgtatacat catggcagac aaacaaaaga 
        481 atggaatcaa agttaacttc aaaattagac acaacattga agatggaagc gttcaactag 
        541 cagaccatta tcaacaaaat actccaattg gcgatggccc tgtcctttta ccagacaacc 
        601 attacctgtc cacacaatct gccctttcga aagatcccaa cgaaaagaga gaccacatgg 
        661 tccttcttga gtttgtaaca gctgctggga ttacacatGG CATGGATGAA CTATACAAAT 
        721 AAAAGCT      
//



2.2. HindIII¿Í EcoRIÀ¸·Î º¤ÅÍ ½ÃÄö½º pUC19c¸¦ ÀÚ¸¨´Ï´Ù.

Ŭ·Î´×¿¡ »ç¿ëµÉ Àμ­Æ® ½ÃÄö½º¸¦ DNACutter·Î ÀÚ¸¨´Ï´Ù.

Àμ­Æ® ½ÃÄö½º¸¦ DNACutÇÏ´Â °Í°ú µ¿ÀÏÇÑ ÇÁ·Î±×·¥À» »ç¿ëÇÏ´Â °ÍÀ̹ǷΠµ¿ÀÏÇÑ °úÁ¤À¸·Î ÇÁ·Î±×·¥À» ¼öÇàÇÏ½Ã¸é µË´Ï´Ù.

º¤ÅÍ ½ÃÄö½º DNA Cut ¼ø¼­

  1. "Enzymes" ÀÔ·Â ÅØ½ºÆ® ¹Ú½º¿¡ Á¦ÇÑÈ¿¼Ò À̸§ HindIII, EcoRI¸¦ ÀÔ·ÂÇÕ´Ï´Ù.

  2. pUC19 ½ÃÄö½º¸¦ ½ÃÄö½º ÀÔ·Â ¹Ú½º¿¡ ÀÔ·ÂÇÕ´Ï´Ù.

    pUC19(GenBank:L09137)¸¦ Sequence Loader¸¦ ÀÌ¿ëÇÏ¿© GENBANK¿¡¼­ ºÒ·¯¿Àµµ·Ï ÇϰڽÀ´Ï´Ù.

    1. "Load Sequence"¹öưÀ» Ŭ¸¯ÇÏ¿© Sequence Loader¸¦ ¿±´Ï´Ù.

    2. ÀÔ·ÂÇÏ·Á´Â pUC19cÀÇ GENBANK AccessionÀ» ¾Ë°í Àֱ⠶§¹®¿¡ GENBANK Accession ÄÞº¸¹Ú½º¸¦ ¼±ÅÃÇÏ°í ¹Ù·Î ¿·ÀÇ ÅØ½ºÆ® ¹Ú½º¿¡ pUC19cÀÇ Accession "L09137"À» ÀÔ·ÂÇÕ´Ï´Ù.

    3. ÄÞº¸¹Ú½º ¿·¿¡ ÀÖ´Â "Load" ¹öưÀ» Ŭ¸¯ÇϽʽÿÀ.

  3. " O K " ¹öưÀ» Ŭ¸¯ÇÏ¿© ÇÁ·Î±×·¥À» ¼öÇà½ÃŰ½Ê½Ã¿À. ÇÁ·Î±×·¥À» ½ÇÇà½ÃŰ¸é ´ÙÀ½°ú °°Àº °á°ú°¡ ³ª¿É´Ï´Ù.

    L09137  Circular DNA, 2686 base pair
    2 restriction enzymes selected, Max Cut=Unlimited
    Fragment
    
     #  Length
     1    2639  HindIII..EcoRI   (448..397)
     2      55  EcoRI..HindIII   (397..448)
    
    NG1.0       NoID             linear    dsDNA  2639 bp
    DESCRIPTION Cloning vector pUC19c, complete sequence.
                2639bp, (HindIII, EcoRI) Restriction fragments of L09137
    FEATURE
       Source   1..2639        F   Genbank:L09137   
       Other    2240           F   SPM             
    ENDS        +4..+4
    SEQUENCE
              1 agcttggcgt aatcatggtc atagctgttt cctgtgtgaa attgttatcc gctcacaatt 
             61 ccacacaaca tacgagccgg aagcataaag tgtaaagcct ggggtgccta atgagtgagc 
            121 taactcacat taattgcgtt gcgctcactg cccgctttcc agtcgggaaa cctgtcgtgc 
            181 cagctgcatt aatgaatcgg ccaacgcgcg gggagaggcg gtttgcgtat tgggcgctct 
            241 tccgcttcct cgctcactga ctcgctgcgc tcggtcgttc ggctgcggcg agcggtatca 
            301 gctcactcaa aggcggtaat acggttatcc acagaatcag gggataacgc aggaaagaac 
            361 atgtgagcaa aaggccagca aaaggccagg aaccgtaaaa aggccgcgtt gctggcgttt 
            421 ttccataggc tccgcccccc tgacgagcat cacaaaaatc gacgctcaag tcagaggtgg 
            481 cgaaacccga caggactata aagataccag gcgtttcccc ctggaagctc cctcgtgcgc 
            541 tctcctgttc cgaccctgcc gcttaccgga tacctgtccg cctttctccc ttcgggaagc 
            601 gtggcgcttt ctcatagctc acgctgtagg tatctcagtt cggtgtaggt cgttcgctcc 
            661 aagctgggct gtgtgcacga accccccgtt cagcccgacc gctgcgcctt atccggtaac 
            721 tatcgtcttg agtccaaccc ggtaagacac gacttatcgc cactggcagc agccactggt 
            781 aacaggatta gcagagcgag gtatgtaggc ggtgctacag agttcttgaa gtggtggcct 
            841 aactacggct acactagaag aacagtattt ggtatctgcg ctctgctgaa gccagttacc 
            901 ttcggaaaaa gagttggtag ctcttgatcc ggcaaacaaa ccaccgctgg tagcggtggt 
            961 ttttttgttt gcaagcagca gattacgcgc agaaaaaaag gatctcaaga agatcctttg 
           1021 atcttttcta cggggtctga cgctcagtgg aacgaaaact cacgttaagg gattttggtc 
           1081 atgagattat caaaaaggat cttcacctag atccttttaa attaaaaatg aagttttaaa 
           1141 tcaatctaaa gtatatatga gtaaacttgg tctgacagtt accaatgctt aatcagtgag 
           1201 gcacctatct cagcgatctg tctatttcgt tcatccatag ttgcctgact ccccgtcgtg 
           1261 tagataacta cgatacggga gggcttacca tctggcccca gtgctgcaat gataccgcga 
           1321 gacccacgct caccggctcc agatttatca gcaataaacc agccagccgg aagggccgag 
           1381 cgcagaagtg gtcctgcaac tttatccgcc tccatccagt ctattaattg ttgccgggaa 
           1441 gctagagtaa gtagttcgcc agttaatagt ttgcgcaacg ttgttgccat tgctacaggc 
           1501 atcgtggtgt cacgctcgtc gtttggtatg gcttcattca gctccggttc ccaacgatca 
           1561 aggcgagtta catgatcccc catgttgtgc aaaaaagcgg ttagctcctt cggtcctccg 
           1621 atcgttgtca gaagtaagtt ggccgcagtg ttatcactca tggttatggc agcactgcat 
           1681 aattctctta ctgtcatgcc atccgtaaga tgcttttctg tgactggtga gtactcaacc 
           1741 aagtcattct gagaatagtg tatgcggcga ccgagttgct cttgcccggc gtcaatacgg 
           1801 gataataccg cgccacatag cagaacttta aaagtgctca tcattggaaa acgttcttcg 
           1861 gggcgaaaac tctcaaggat cttaccgctg ttgagatcca gttcgatgta acccactcgt 
           1921 gcacccaact gatcttcagc atcttttact ttcaccagcg tttctgggtg agcaaaaaca 
           1981 ggaaggcaaa atgccgcaaa aaagggaata agggcgacac ggaaatgttg aatactcata 
           2041 ctcttccttt ttcaatatta ttgaagcatt tatcagggtt attgtctcat gagcggatac 
           2101 atatttgaat gtatttagaa aaataaacaa ataggggttc cgcgcacatt tccccgaaaa 
           2161 gtgccacctg acgtctaaga aaccattatt atcatgacat taacctataa aaataggcgt 
           2221 atcacgaggc cctttcgtct cgcgcgtttc ggtgatgacg gtgaaaacct ctgacacatg 
           2281 cagctcccgg agacggtcac agcttgtctg taagcggatg ccgggagcag acaagcccgt 
           2341 cagggcgcgt cagcgggtgt tggcgggtgt cggggctggc ttaactatgc ggcatcagag 
           2401 cagattgtac tgagagtgca ccatatgcgg tgtgaaatac cgcacagatg cgtaaggaga 
           2461 aaataccgca tcaggcgcca ttcgccattc aggctgcgca actgttggga agggcgatcg 
           2521 gtgcgggcct cttcgctatt acgccagctg gcgaaagggg gatgtgctgc aaggcgatta 
           2581 agttgggtaa cgccagggtt ttcccagtca cgacgttgta aaacgacggc cagtgaatt 
    //
    
    NG1.0       NoID             linear    dsDNA  55 bp
    DESCRIPTION Cloning vector pUC19c, complete sequence.
                55bp, (EcoRI, HindIII) Restriction fragments of L09137
    FEATURE
       Source   1..55          F   L09137   
    ENDS        +4..+4
    SEQUENCE
              1 aattcgagct cggtacccgg ggatcctcta gagtcgacct gcaggcatgc aagct 
    //
    
  4. Àμ­Æ® ½ÃÄö½º¿Í ¸¶Âù°¡Áö·Î °¡Àå Å« ½ÃÄö½º Á¶°¢À» ¼±ÅÃÇϰí "Add selected sequence to WorkBench"¸¦ Ŭ¸¯ÇÏ¿© WorkBench¿¡ ³Ö½À´Ï´Ù.


2.3. Á¦ÇÑÈ¿¼Ò·Î À߸° µÎ ½ÃÄö½º¸¦ ¶óÀ̰ÔÀ̼ÇÇÕ´Ï´Ù.

ÀÌÁ¦ Àß·ÁÁø º¤ÅÍ¿Í Àμ­Æ® ½ÃÄö½º¸¦ Çϳª·Î ÇÕÃļ­ ¿øÇÏ´Â ½ÃÄö½º·Î ¸¸µì´Ï´Ù.

Ligation ¼ø¼­

  1. ¿©±â¸¦ Ŭ¸¯ÇÏ¿© A-Ligator ÆäÀÌÁö¸¦ ¿©½Ê½Ã¿À.

  2. "Ligation Product ID"¿¡ ¶óÀ̰ÔÀ̼ÇÇÑ ½ÃÄö½ºÀÇ ID¸¦ ÀÔ·ÂÇϽʽÿÀ

    ¿©±â¼­´Â pUC19¿Í GFP¸¦ Ŭ·Î´× ÇÏ¿´À¸¹Ç·Î "pUC19_GFP"·Î ÀÔ·ÂÇϰڽÀ´Ï´Ù.

  3. º¤ÅͽÃÄö½º¸¦ ÀÔ·ÂÇϽʽÿÀ

    pUC19c ½ÃÄö½º¸¦ HindIII, EcoRIÀ¸·Î CutÇÑ ½ÃÄö½º·Î Sequence Loader¿¡¼­ "NoID;2639"·Î Ç¥½ÃµÈ ½ÃÄö½ºÀÔ´Ï´Ù.

  4. Àμ­Æ® ½ÃÄö½º¸¦ ÀÔ·ÂÇϽʽÿÀ

    GFP cDNA¸¦ PCRÇÑ ½ÃÄö½º¸¦ HindIII, EcoRIÀ¸·Î CutÇÑ ½ÃÄö½º·Î Sequence Loader¿¡¼­ "NoID;727"·Î Ç¥½ÃµÈ ½ÃÄö½ºÀÔ´Ï´Ù.

  5. " O K " ¹öưÀ» Ŭ¸¯ÇÏ¿© ÇÁ·Î±×·¥À» ¼öÇà½ÃŰ½Ê½Ã¿À

    ÇÁ·Î±×·¥À» ½ÇÇà½ÃŰ¸é ´ÙÀ½°ú °°Àº °á°ú°¡ ³ª¿É´Ï´Ù.

    NG1.0       pUC19_GFP        circular  dsDNA  3358 bp
    DESCRIPTION Ligation product of vector NoID (2639bp) and insert NoID(727bp)
                Synthetic construct pUC19c cloning vector sequence.
                Yanisch-Perron,C., Vieira,J. and Messing,J.
                (1985) Gene 33 (1), 103-119 (1985)
                2639bp, (HindIII, EcoRI) Restriction fragments of Genbank:X02514
    FEATURE
       Source   1120..400      F   Genbank:X02514   
       Source   1120..400      F   NoID   
       Source   402..1118      R   Genbank:M62653   
       Source   1096..1123     R   PrimerA   
       Source   397..424       F   PrimerB   
       Source   397..1123      R   Genbank:NoID   
       Source   397..1123      R   NoID   
       CDS      2298..3158     R   AmpR            
       CDS      402..1118      R   GFP             
       Promoter 1127..1354     R   Lac_promoter    
       Promoter 3193           R   AmpR_promoter   
       Other    1539..2072     R   Ori             
    ENDS        0..0
    SEQUENCE
              1 tcgcgcgttt cggtgatgac ggtgaaaacc tctgacacat gcagctcccg gagacggtca 
             61 cagcttgtct gtaagcggat gccgggagca gacaagcccg tcagggcgcg tcagcgggtg 
            121 ttggcgggtg tcggggctgg cttaactatg cggcatcaga gcagattgta ctgagagtgc 
            181 accatatgcg gtgtgaaata ccgcacagat gcgtaaggag aaaataccgc atcaggcgcc 
            241 attcgccatt caggctgcgc aactgttggg aagggcgatc ggtgcgggcc tcttcgctat 
            301 tacgccagct ggcgaaaggg ggatgtgctg caaggcgatt aagttgggta acgccagggt 
            361 tttcccagtc acgacgttgt aaaacgacgg ccagtgaatt CTTATTTGTA TAGTTCATCC 
            421 ATGCcatgtg taatcccagc agctgttaca aactcaagaa ggaccatgtg gtctctcttt 
            481 tcgttgggat ctttcgaaag ggcagattgt gtggacaggt aatggttgtc tggtaaaagg 
            541 acagggccat cgccaattgg agtattttgt tgataatggt ctgctagttg aacgcttcca 
            601 tcttcaatgt tgtgtctaat tttgaagtta actttgattc cattcttttg tttgtctgcc 
            661 atgatgtata cattgtgtga gttatagttg tattccaatt tgtgtccaag aatgtttcca 
            721 tcttctttaa aatcaatacc ttttaactcg attctattaa caagggtatc accttcaaac 
            781 ttgacttcag cacgtgtctt gtagttcccg tcatctttga aaaatatagt tctttcctgt 
            841 acataacctt cgggcatggc actcttgaaa aagtcatgct gtttcatatg atctgggtat 
            901 cttgaaaagc attgaacacc ataagagaaa gtagtgacaa gtgttggcca tggaacaggt 
            961 agttttccag tagtgcaaat aaatttaagg gtaagttttc cgtatgttgc atcaccttca 
           1021 ccctctccac tgacagaaaa tttgtgccca ttaacatcac catctaattc aacaagaatt 
           1081 gggacaactc cagtgAAAAG TTCTTCTCCT TTACTCATAa gcttggcgta atcatggtca 
           1141 tagctgtttc ctgtgtgaaa ttgttatccg ctcacaattc cacacaacat acgagccgga 
           1201 agcataaagt gtaaagcctg gggtgcctaa tgagtgagct aactcacatt aattgcgttg 
           1261 cgctcactgc ccgctttcca gtcgggaaac ctgtcgtgcc agctgcatta atgaatcggc 
           1321 caacgcgcgg ggagaggcgg tttgcgtatt gggcgctctt ccgcttcctc gctcactgac 
           1381 tcgctgcgct cggtcgttcg gctgcggcga gcggtatcag ctcactcaaa ggcggtaata 
           1441 cggttatcca cagaatcagg ggataacgca ggaaagaaca tgtgagcaaa aggccagcaa 
           1501 aaggccagga accgtaaaaa ggccgcgttg ctggcgtttt tccataggct ccgcccccct 
           1561 gacgagcatc acaaaaatcg acgctcaagt cagaggtggc gaaacccgac aggactataa 
           1621 agataccagg cgtttccccc tggaagctcc ctcgtgcgct ctcctgttcc gaccctgccg 
           1681 cttaccggat acctgtccgc ctttctccct tcgggaagcg tggcgctttc tcatagctca 
           1741 cgctgtaggt atctcagttc ggtgtaggtc gttcgctcca agctgggctg tgtgcacgaa 
           1801 ccccccgttc agcccgaccg ctgcgcctta tccggtaact atcgtcttga gtccaacccg 
           1861 gtaagacacg acttatcgcc actggcagca gccactggta acaggattag cagagcgagg 
           1921 tatgtaggcg gtgctacaga gttcttgaag tggtggccta actacggcta cactagaagg 
           1981 acagtatttg gtatctgcgc tctgctgaag ccagttacct tcggaaaaag agttggtagc 
           2041 tcttgatccg gcaaacaaac caccgctggt agcggtggtt tttttgtttg caagcagcag 
           2101 attacgcgca gaaaaaaagg atctcaagaa gatcctttga tcttttctac ggggtctgac 
           2161 gctcagtgga acgaaaactc acgttaaggg attttggtca tgagattatc aaaaaggatc 
           2221 ttcacctaga tccttttaaa ttaaaaatga agttttaaat caatctaaag tatatatgag 
           2281 taaacttggt ctgacagtta ccaatgctta atcagtgagg cacctatctc agcgatctgt 
           2341 ctatttcgtt catccatagt tgcctgactc cccgtcgtgt agataactac gatacgggag 
           2401 ggcttaccat ctggccccag tgctgcaatg ataccgcgag acccacgctc accggctcca 
           2461 gatttatcag caataaacca gccagccgga agggccgagc gcagaagtgg tcctgcaact 
           2521 ttatccgcct ccatccagtc tattaattgt tgccgggaag ctagagtaag tagttcgcca 
           2581 gttaatagtt tgcgcaacgt tgttgccatt gctacaggca tcgtggtgtc acgctcgtcg 
           2641 tttggtatgg cttcattcag ctccggttcc caacgatcaa ggcgagttac atgatccccc 
           2701 atgttgtgca aaaaagcggt tagctccttc ggtcctccga tcgttgtcag aagtaagttg 
           2761 gccgcagtgt tatcactcat ggttatggca gcactgcata attctcttac tgtcatgcca 
           2821 tccgtaagat gcttttctgt gactggtgag tactcaacca agtcattctg agaatagtgt 
           2881 atgcggcgac cgagttgctc ttgcccggcg tcaatacggg ataataccgc gccacatagc 
           2941 agaactttaa aagtgctcat cattggaaaa cgttcttcgg ggcgaaaact ctcaaggatc 
           3001 ttaccgctgt tgagatccag ttcgatgtaa cccactcgtg cacccaactg atcttcagca 
           3061 tcttttactt tcaccagcgt ttctgggtga gcaaaaacag gaaggcaaaa tgccgcaaaa 
           3121 aagggaataa gggcgacacg gaaatgttga atactcatac tcttcctttt tcaatattat 
           3181 tgaagcattt atcagggtta ttgtctcatg agcggataca tatttgaatg tatttagaaa 
           3241 aataaacaaa taggggttcc gcgcacattt ccccgaaaag tgccacctga cgtctaagaa 
           3301 accattatta tcatgacatt aacctataaa aataggcgta tcacgaggcc ctttcgtc 
    //
    

2.4. ¸¸µé¾îÁø pUC19_GFP ½ÃÄö½º

NG1.0       pUC19_GFP        circular  dsDNA  3358 bp
DESCRIPTION Ligation product of vector NoID (2639bp) and insert NoID(727bp)
            Synthetic construct pUC19c cloning vector sequence.
            Yanisch-Perron,C., Vieira,J. and Messing,J.
            (1985) Gene 33 (1), 103-119 (1985)
            2639bp, (HindIII, EcoRI) Restriction fragments of Genbank:X02514
FEATURE
   Source   1120..400      F   Genbank:X02514   
   Source   1120..400      F   NoID   
   Source   402..1118      R   Genbank:M62653   
   Source   1096..1123     R   PrimerA   
   Source   397..424       F   PrimerB   
   Source   397..1123      R   Genbank:NoID   
   Source   397..1123      R   NoID   
   CDS      2298..3158     R   AmpR            
   CDS      402..1118      R   GFP             
   Promoter 1127..1354     R   Lac_promoter    
   Promoter 3193           R   AmpR_promoter   
   Other    1539..2072     R   Ori             
ENDS        0..0
SEQUENCE
          1 tcgcgcgttt cggtgatgac ggtgaaaacc tctgacacat gcagctcccg gagacggtca 
         61 cagcttgtct gtaagcggat gccgggagca gacaagcccg tcagggcgcg tcagcgggtg 
        121 ttggcgggtg tcggggctgg cttaactatg cggcatcaga gcagattgta ctgagagtgc 
        181 accatatgcg gtgtgaaata ccgcacagat gcgtaaggag aaaataccgc atcaggcgcc 
        241 attcgccatt caggctgcgc aactgttggg aagggcgatc ggtgcgggcc tcttcgctat 
        301 tacgccagct ggcgaaaggg ggatgtgctg caaggcgatt aagttgggta acgccagggt 
        361 tttcccagtc acgacgttgt aaaacgacgg ccagtgaatt CTTATTTGTA TAGTTCATCC 
        421 ATGCcatgtg taatcccagc agctgttaca aactcaagaa ggaccatgtg gtctctcttt 
        481 tcgttgggat ctttcgaaag ggcagattgt gtggacaggt aatggttgtc tggtaaaagg 
        541 acagggccat cgccaattgg agtattttgt tgataatggt ctgctagttg aacgcttcca 
        601 tcttcaatgt tgtgtctaat tttgaagtta actttgattc cattcttttg tttgtctgcc 
        661 atgatgtata cattgtgtga gttatagttg tattccaatt tgtgtccaag aatgtttcca 
        721 tcttctttaa aatcaatacc ttttaactcg attctattaa caagggtatc accttcaaac 
        781 ttgacttcag cacgtgtctt gtagttcccg tcatctttga aaaatatagt tctttcctgt 
        841 acataacctt cgggcatggc actcttgaaa aagtcatgct gtttcatatg atctgggtat 
        901 cttgaaaagc attgaacacc ataagagaaa gtagtgacaa gtgttggcca tggaacaggt 
        961 agttttccag tagtgcaaat aaatttaagg gtaagttttc cgtatgttgc atcaccttca 
       1021 ccctctccac tgacagaaaa tttgtgccca ttaacatcac catctaattc aacaagaatt 
       1081 gggacaactc cagtgAAAAG TTCTTCTCCT TTACTCATAa gcttggcgta atcatggtca 
       1141 tagctgtttc ctgtgtgaaa ttgttatccg ctcacaattc cacacaacat acgagccgga 
       1201 agcataaagt gtaaagcctg gggtgcctaa tgagtgagct aactcacatt aattgcgttg 
       1261 cgctcactgc ccgctttcca gtcgggaaac ctgtcgtgcc agctgcatta atgaatcggc 
       1321 caacgcgcgg ggagaggcgg tttgcgtatt gggcgctctt ccgcttcctc gctcactgac 
       1381 tcgctgcgct cggtcgttcg gctgcggcga gcggtatcag ctcactcaaa ggcggtaata 
       1441 cggttatcca cagaatcagg ggataacgca ggaaagaaca tgtgagcaaa aggccagcaa 
       1501 aaggccagga accgtaaaaa ggccgcgttg ctggcgtttt tccataggct ccgcccccct 
       1561 gacgagcatc acaaaaatcg acgctcaagt cagaggtggc gaaacccgac aggactataa 
       1621 agataccagg cgtttccccc tggaagctcc ctcgtgcgct ctcctgttcc gaccctgccg 
       1681 cttaccggat acctgtccgc ctttctccct tcgggaagcg tggcgctttc tcatagctca 
       1741 cgctgtaggt atctcagttc ggtgtaggtc gttcgctcca agctgggctg tgtgcacgaa 
       1801 ccccccgttc agcccgaccg ctgcgcctta tccggtaact atcgtcttga gtccaacccg 
       1861 gtaagacacg acttatcgcc actggcagca gccactggta acaggattag cagagcgagg 
       1921 tatgtaggcg gtgctacaga gttcttgaag tggtggccta actacggcta cactagaagg 
       1981 acagtatttg gtatctgcgc tctgctgaag ccagttacct tcggaaaaag agttggtagc 
       2041 tcttgatccg gcaaacaaac caccgctggt agcggtggtt tttttgtttg caagcagcag 
       2101 attacgcgca gaaaaaaagg atctcaagaa gatcctttga tcttttctac ggggtctgac 
       2161 gctcagtgga acgaaaactc acgttaaggg attttggtca tgagattatc aaaaaggatc 
       2221 ttcacctaga tccttttaaa ttaaaaatga agttttaaat caatctaaag tatatatgag 
       2281 taaacttggt ctgacagtta ccaatgctta atcagtgagg cacctatctc agcgatctgt 
       2341 ctatttcgtt catccatagt tgcctgactc cccgtcgtgt agataactac gatacgggag 
       2401 ggcttaccat ctggccccag tgctgcaatg ataccgcgag acccacgctc accggctcca 
       2461 gatttatcag caataaacca gccagccgga agggccgagc gcagaagtgg tcctgcaact 
       2521 ttatccgcct ccatccagtc tattaattgt tgccgggaag ctagagtaag tagttcgcca 
       2581 gttaatagtt tgcgcaacgt tgttgccatt gctacaggca tcgtggtgtc acgctcgtcg 
       2641 tttggtatgg cttcattcag ctccggttcc caacgatcaa ggcgagttac atgatccccc 
       2701 atgttgtgca aaaaagcggt tagctccttc ggtcctccga tcgttgtcag aagtaagttg 
       2761 gccgcagtgt tatcactcat ggttatggca gcactgcata attctcttac tgtcatgcca 
       2821 tccgtaagat gcttttctgt gactggtgag tactcaacca agtcattctg agaatagtgt 
       2881 atgcggcgac cgagttgctc ttgcccggcg tcaatacggg ataataccgc gccacatagc 
       2941 agaactttaa aagtgctcat cattggaaaa cgttcttcgg ggcgaaaact ctcaaggatc 
       3001 ttaccgctgt tgagatccag ttcgatgtaa cccactcgtg cacccaactg atcttcagca 
       3061 tcttttactt tcaccagcgt ttctgggtga gcaaaaacag gaaggcaaaa tgccgcaaaa 
       3121 aagggaataa gggcgacacg gaaatgttga atactcatac tcttcctttt tcaatattat 
       3181 tgaagcattt atcagggtta ttgtctcatg agcggataca tatttgaatg tatttagaaa 
       3241 aataaacaaa taggggttcc gcgcacattt ccccgaaaag tgccacctga cgtctaagaa 
       3301 accattatta tcatgacatt aacctataaa aataggcgta tcacgaggcc ctttcgtc 
//

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GFP¸¦ pUC19 º¤ÅÍ¿¡ Ŭ·Î´×ÇÑ ½ÃÄö½ºÀÇ Plasmid Map